User Guide

This section is for day-to-day usage, result interpretation, and debugging.

User Guide Topics

• Workflows
  • A Practical Default
  • When to Switch Modes
• SPES Candidate Prioritization
  • What SPES Is
  • When It Is Generated
  • How To View It
  • Important Columns
  • How To Interpret It
  • Python Usage
  • Required Input Columns
• Best Practices
  • Recommendations
• Troubleshooting
  • Common Problems
  • Machine Learning Compatibility (Important)
  • CLI Input Path Pitfalls
  • Remote Linux (HPC) Step-7 Re-run Pattern
  • Related Example
• Advanced Usage
  • Typical Advanced Directions
  • Advanced Mindset

When to read each page

• workflows: complete operational flow and rerun strategy

• spes: candidate prioritization after ML analysis

• best_practices: stable project organization and reproducibility tips

• troubleshooting: common errors and direct fixes

• advanced_usage: custom settings and advanced control